PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899498.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 179aa    MW: 19964.3 Da    PI: 10.1769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000834567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+++F++   L  H  +H
  XP_015899498.1 45 FECKTCNRRFPSFQALGGHRASH 67
                    89**********99999998887 PP

2zf-C2H211.50.0009195117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F     L  H+r+H
  XP_015899498.1  95 HECSICGLEFAMGQALGGHMRRH 117
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-844117No hitNo description
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-134569IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8474572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM003550.2295117IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-1195118IPR007087Zinc finger, C2H2
PROSITE profilePS501579.14195117IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRTREEEGG IQQQSLDLAQ CLIMLSHGLQ TKPTKQFTAG PAEIFECKTC NRRFPSFQAL  60
GGHRASHKKP RLVGEEPKNE TKFGNRISVD KPKMHECSIC GLEFAMGQAL GGHMRRHRTV  120
AMDMAEFSSV VPVVSKAPVV LKRSNSVKVL WMDLNLTPLE NDLKLLFGKM APKVDAFVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899498.11e-132PREDICTED: zinc finger protein ZAT11
TrEMBLM5WM452e-64M5WM45_PRUPE; Uncharacterized protein
STRINGGLYMA03G33050.13e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-40C2H2 family protein