PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899365.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 536aa    MW: 58692.8 Da    PI: 6.941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31291349259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_015899365.1 291 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGQHNHP 349
                     7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-34275351IPR003657WRKY domain
SuperFamilySSF1182905.75E-28283351IPR003657WRKY domain
PROSITE profilePS5081129.677285351IPR003657WRKY domain
SMARTSM007742.5E-37290350IPR003657WRKY domain
PfamPF031066.8E-27292349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDHLNCSPER SGEDGKRVVN ELDFFGVKTG NLMMIKEKES FHVKEEMNHR DDERLQGMQL  60
DVNTGLNLLT TNSSSDKSTL DDETSHTMED KHPTNKLAAL RTEIDRMSVE NERLKGLLNQ  120
VNNNYHVLHM HLKTVMQREK YNQKTGTAVE YKMINGLLED QKQSGVVVPR QFMDMGRIPL  180
PEKDDVNSQS SFEGRSGINC TNSGSPKNDI VESMECKTKT TSLSCKDSGR NDNNHGDRDE  240
ESQEHEFSGW VSNKVPKFIS PKDEDQTPET MSMIRKARVS VRARCEASMM SDGCQWRKYG  300
QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRTILIT TYEGQHNHPL PPAAVAMAST  360
TSAAASMLLS GSMPSADGLV TPNNLLARST TASCAPSLAT LSASAPFPTV TLDLTRPPPT  420
SSSESQRLLH PQGEFTLNLQ PLPHNVMSVP QAFSKFSGLH GLNNGAHLAA SQMQQTPMAA  480
TADTVSAATA AITSDPNFTA ALVAAITSII GNAKSNNTNN NNINNAITRS GDNNIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22277353176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899365.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-122WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLM5WK691e-168M5WK69_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_10s0116g01200.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-90WRKY family protein