PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898437.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 321aa    MW: 34292.1 Da    PI: 8.0335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013135157123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_015898437.1 135 YQCKTCNRCFPSFQALGGHRASH 157
                     9***********99999998887 PP

2zf-C2H213.20.00027218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_015898437.1 218 HECSICGAEFTSGQALGGHMRRH 240
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.13E-7134157No hitNo description
PfamPF139129.9E-11134159IPR007087Zinc finger, C2H2
SMARTSM003550.08135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305135162IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-7213240No hitNo description
PfamPF139124.6E-12218241IPR007087Zinc finger, C2H2
SMARTSM003550.01218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNIMDAQDEV KDNSHMIKGK RTKRQRPLSP LALTMASCSS GDNGGESGRL VSENSGGIVD  60
GGVITASPTT SNDFAAESTE EEEDMANCLI LLARGYTTTT GRKIRGQPVT SSSTMTMSGG  120
TKGGGGGGGG GMYVYQCKTC NRCFPSFQAL GGHRASHKKP KAASNNNNNN VLDDKKGLVF  180
MEAEEHVDHF NHASTALSLQ ISNRGVFGHS QSKANKLHEC SICGAEFTSG QALGGHMRRH  240
RTFMNTSTAT TTTTTTTTTT LSVGNSTSPE SQESKKARNV NLQLDLNLPA PEDDRRENKF  300
PFTAKEQVIV FSASPLVDCH Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898437.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869231.10.0zinc finger protein ZAT5-like
RefseqXP_015898437.10.0zinc finger protein ZAT5-like
TrEMBLA0A2H5QKA61e-103A0A2H5QKA6_CITUN; Uncharacterized protein
STRINGXP_006493540.11e-103(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-61C2H2 family protein