PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 334aa    MW: 37653.4 Da    PI: 6.5289
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35101022103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d++++ li w + +nsf+v+d+ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_015898330.1  10 FVMKTYQMVNDPTTDFLIAWGRANNSFIVIDPLEFSQRMLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLKN 95 
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_015898330.1  96 IVRRKHS 102
                     ***9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-53699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-37799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-301099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGTNVVAPF VMKTYQMVND PTTDFLIAWG RANNSFIVID PLEFSQRMLP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK HLLKNIVRRK HSRYTHLQPK HEELDDEDIV  120
MEIARLKQEQ KTLEEELEGM NKRLEATERR PQQMMAFLYK IVEDPDILPR MMMKNKHRTN  180
QISEKKRRLM ISSASSSNSS GMAGTNSVKT EEDEDGTIGV ISSPETGLEM DSFCRSSRSP  240
DAPAQGWWSQ RQVVDRPWIA QEPYGCSGIA SPPSTATGRE FGMGVSPPAS NMVGYGNGSS  300
SSGSGQIGYF TEVVAGVETS PPPPYPFSLL GGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2519911120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898330.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2I4DEK31e-152A0A2I4DEK3_JUGRE; heat stress transcription factor C-1-like
STRINGXP_004287427.11e-148(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-85heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]