PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898154.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 462aa    MW: 49997.4 Da    PI: 8.1294
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898154.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.9e-32260315156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_015898154.1 260 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 315
                     68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.72E-17257318IPR009057Homeodomain-like
PROSITE profilePS5129413.355257317IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-28258318IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26260315IPR006447Myb domain, plants
PfamPF002498.1E-7262313IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MASPSELSLE CKPHSYSMLL KSIGDHPADQ TRKLEETLSR LEEERLKIDA FKRELPLCMQ  60
LLTQAVENSR QQLQAYRANQ GPRPVLEEFI PLKHSNSEGS EKSTNISDKA NWMTSAQLWS  120
QASDVTKPQS TITSTKEADI GFNVSPKLAF DNKLQRNNGG GAFLPFSKDR SSSSSSPTLR  180
PLPELALVST DKDLEDNKKC LEAENGVSCS RRSDNSGKIG NGGCGVIEPG KGGGSGSDGQ  240
QTNNNNNGSN TTTSSQTHRK ARRCWSPDLH RRFVNALQML GGSQVATPKQ IRELMKVDGL  300
TNDEVKSHLQ KYRLHTRRPS PSPHTAGAPA PQLVLISGIW VPPEYASAAA AAHSGAQAIY  360
SPHPASHAPP HYCAPPVPQD FYSAPTPAPA PPPPHHQLHH HTLHHQLHLY KAASQTHSSP  420
ESDARGVGGD RSESIEDGKS GSSSWKGDSS ENGGDQRNVL AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14260313154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898154.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898154.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-117EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A067KBG00.0A0A067KBG0_JATCU; Uncharacterized protein
TrEMBLA0A2C9ULC20.0A0A2C9ULC2_MANES; Uncharacterized protein
STRINGcassava4.1_007257m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-99G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]