PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 495aa    MW: 53860.8 Da    PI: 7.3527
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.1e-15218269155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_015896472.1 218 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 269
                     57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003672.0E-6149160IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18218279IPR016177DNA-binding domain
CDDcd000183.42E-25218279No hitNo description
PfamPF008476.3E-10218269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18219278IPR001471AP2/ERF domain
PROSITE profilePS5103219.045219277IPR001471AP2/ERF domain
SMARTSM003801.5E-33219283IPR001471AP2/ERF domain
PRINTSPR003672.0E-6259279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDSSSSSSPQ NWLAFSLSNY PHLHSHPQHH HLSLFEVFTS SNPEREKLED FLGGCGGGGG  60
STTTATTTSA ATPSLTQFST ETTAIAALPD SSEIYDSELK TIAASFLRGY SSSSSNEHTE  120
TGRNQLPVVP VEPTSKKTVD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR  180
QVYLDFVYCL SEYYSTHECI IIPLILYRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  240
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSIASSN LPIGGMSGKS  300
KNSSESISDS KSIDGSRSAT DDRDGLSSAS SVTFATQPTS STLSFAIPIK QDPSDYWSNI  360
FGFHNSAKSN PSIAPTLFHN VNTSSSSVPF NMDFSAESNN GFFNTSGTTG YATTTSTTTT  420
QQHQHQQQQQ QQSSVSVSGS SGGSTVAAFS TQIALNSNNG YETSSGYGSW IGPTLHTFQT  480
HAKPNLFQTP IFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896472.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-111AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A251QUH01e-177A0A251QUH0_PRUPE; Uncharacterized protein
STRINGEMJ268261e-176(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-97AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]