PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894322.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 581aa    MW: 62212.2 Da    PI: 9.8347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894322.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_015894322.1 72 FICEVCNKGFQREQNLQLHRRGH 94
                    89*******************88 PP
2zf-C2H213.10.00028148170123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_015894322.1 148 WKCEKCSKRYAVQSDWKAHSKTC 170
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-77194No hitNo description
Gene3DG3DSA:3.30.160.606.5E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PfamPF121712.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355130113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSAASSSMPF FGTTTREENQ NQMLQQPTST PASSIAPTTA PPKKRRNQPG TPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTNKEPKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTSL NTIGGHIYGN NHMSLGLSQM GSQIPSLQNQ  240
NHPSNNMLRL GNPGGPKLEH LIQPSNPPYG APPPPQHLSS SAFYLPDAAN QPFQDHQSHH  300
HGIPFSNKPL QGLMQLPDLQ TSSNNSSGGA GPAAANLFNL GFFSNNSNAT GSISPDQFND  360
GTNTGQGGTG LFPNNMGDHI GSGMSSLFGN SVQHENIAPH MSATALLQKA AQMGSTTSNE  420
SSNLLRTLRA SSSNRAAAAA AAAKSDRQVM SPNSIQNIGG VENENHLQGL MNSLANGTSA  480
ASMFGGGQGQ DNTFGGFSGG GGGGVAEAKL HQNLAASFGG SDKLTLDFLG VGGIVRNMGG  540
GYSQRDLQHQ QQQHGMTSMT SLDPQLKSTQ GSQPFRGTAL Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894322.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-137IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A061EG080.0A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
STRINGVIT_01s0010g02090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-118indeterminate(ID)-domain 5