PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891463.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 205aa    MW: 22452.5 Da    PI: 8.0949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-39111121101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l
  XP_015891463.1  11 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 105
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_015891463.1 106 MQAKAQL 112
                     9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77210112IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3811109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MASGTHGTGS PCGACKFLRR KCASDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLLHV  60
PVPDRCEAVV TIAYEAQARI RDPVYGCVAH IFALQQQVAC LQAQLMQAKA QLAQNLIESR  120
NMENQWPGFA NGGANFPNYG NYRNPISPQS SLESVEHNND GMSTQELQGC REDFSLLQPC  180
SKKRPNNATT DLGELQALAL RMMRN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891463.11e-154PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-76LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM5VUH71e-114M5VUH7_PRUPE; Uncharacterized protein
STRINGVIT_07s0005g03030.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-63lateral organ boundaries-domain 16