PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 136aa    MW: 15307.9 Da    PI: 5.3667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-201667256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +++g+
  XP_015891439.1 16 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDRAAFAFRGH 67
                    69*******.**********98887..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.80E-291575No hitNo description
SuperFamilySSF541718.5E-241675IPR016177DNA-binding domain
SMARTSM003803.1E-361680IPR001471AP2/ERF domain
PROSITE profilePS5103225.1191674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-311676IPR001471AP2/ERF domain
PfamPF008472.0E-141667IPR001471AP2/ERF domain
PRINTSPR003671.1E-111728IPR001471AP2/ERF domain
PRINTSPR003671.1E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEPKRPGNEQ KGKEARYRGI RRRPWGKFAA EIRDPSRNGA RLWLGTFDTA EEAARAYDRA  60
AFAFRGHLAI LNFPNEYQYG NTSSSPAESS SVSGGVGKGG MSRAQEVEVI EFEYLDDKLL  120
EELLDTQEDM QEKSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-321411912114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015891439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891439.12e-96ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5X7W93e-52A0A2P5X7W9_GOSBA; Uncharacterized protein
STRINGEOX944721e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]