PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890705.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 556aa    MW: 60204.1 Da    PI: 8.5566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_015890705.1 77 FICEICNKGFQRDQNLQLHRRGH 99
                    89*******************88 PP

2zf-C2H212.60.00042153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_015890705.1 153 WKCDKCSKRYAVQSDWKAHSKTC 175
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.37E-77699No hitNo description
SMARTSM003550.0227799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8457799IPR007087Zinc finger, C2H2
PfamPF121716.8E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355250118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-4141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.37E-7148173No hitNo description
SMARTSM00355140153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDENMSNLTS ASGEAASVSS GNRTEIGTNY PSQYFAPPPQ TQIQPPLKKK RNLPGNPDPD  60
AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEIKKKVYVC  120
PETSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR AISANPVLLS SQQQQQQHPG GASSTSHMNL  240
QIPQFNHPHH HQELHGFALK KENFSSLRPE IPPWLAFNNA GPPPPHLDIS SSSSIFSTTT  300
RLDQDLPNIH ETHHPNPNPS LGPTLPPYQP TPSPHMSATA LLQKAAQMGA TMSSKTTSTT  360
TATAAASSSS SPSTMIRAHH QLHVSSSADH DSGNNNSNGN FGLNLSSRDE MLLGTAGFAH  420
GLPAFGNNKA ATISSASPSV SASATTANTL PLPPPPPHPS LLHDMMNSLS SGTGFEGTCF  480
EDAFSGILSN SKKLDHKTNG GGDENGGSCG GDQGLTRDFL GLRALSHSDI MSFAGLGNCM  540
NTSREHENQT HKPWQG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489181e-112AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890704.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-129IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0B0NH250.0A0A0B0NH25_G
STRINGVIT_09s0002g02300.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-117indeterminate(ID)-domain 7