PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 350aa    MW: 39152.2 Da    PI: 5.1271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07150171223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_015890628.1 150 FCEICGKGFKRDANLRMHMRAH 171
                     6*******************99 PP

2zf-C2H212.40.00049236259123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ ksFs   +Lk+H++ +
  XP_015890628.1 236 YSCNRCNkKSFSVLADLKSHLKHC 259
                     99*******************977 PP

3zf-C2H2120.00065267283521
                     TTTEEESSHHHHHHHHH CS
         zf-C2H2   5 dCgksFsrksnLkrHir 21 
                      Cg++Fsrk+ L  H++
  XP_015890628.1 267 TCGTTFSRKDKLFGHMS 283
                     6***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.75E-6146172No hitNo description
SMARTSM003550.0015149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.718149176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5149171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SMARTSM0035532198231IPR015880Zinc finger, C2H2-like
SMARTSM0035514236258IPR015880Zinc finger, C2H2-like
SMARTSM00355240264288IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPYLGESPQL PPEYSSDTTG RDPIPSMDPR IPLQNLSEVR ASMDSLHGFL SNSVNLNAQL  60
SKDQMDMVSS EIASAIQQIV ASGTALIASY RVPDPPDRIP IPCVKIEEEE EETVVTKKDE  120
EEEEEVGDAA GDLEIVELDS VELLAEHIHF CEICGKGFKR DANLRMHMRA HGNRFKTREA  180
LTKPPEKIGS DPSSRIRFSC PYVGCNRNKG HKKFRALKSV VCVKNHFKRS HCPKMYSCNR  240
CNKKSFSVLA DLKSHLKHCG ETKWRCTCGT TFSRKDKLFG HMSLFEGHVP AVVDEDEKGK  300
SAVTAMEEDE NEVMAVKGGE LSANLEDDEE FFEGFDSIDG FCLENAFWSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890861.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
RefseqXP_015890628.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A0A0KGR61e-131A0A0A0KGR6_CUCSA; Uncharacterized protein
STRINGPOPTR_0007s05340.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-77C2H2 family protein