PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890394.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33039.2 Da    PI: 8.4193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-19148202256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_015890394.1 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202
                     788899***********************************************98 PP

2HD-ZIP_I/II124.55e-40148237191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL+ +l
  XP_015890394.1 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELK-AL 237
                     69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-18135198IPR009057Homeodomain-like
SuperFamilySSF466895.85E-19137205IPR009057Homeodomain-like
PROSITE profilePS5007117.718144204IPR001356Homeobox domain
SMARTSM003891.0E-15146208IPR001356Homeobox domain
CDDcd000862.92E-16148205No hitNo description
PfamPF000463.4E-16148202IPR001356Homeobox domain
PROSITE patternPS000270179202IPR017970Homeobox, conserved site
SMARTSM003405.8E-25204247IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9204238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGFDDVCNTG LVLRLGFTAA QESCPSSKVD SNINERPKKT LVTNFSLSST SNFEPSLTLG  60
LSGTEPGHHH QQQQVVASSC RSSKIDVNKG CEESNNIDLY RQPSPHSAVS SFSSGRVKRE  120
RDLSSEEIEV ERVSSRVSDE DEDGSNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA  180
RQLNLRPRQV EVWFQNRRAR TKLKQTEVDC ELLKKCCETL TDENRRLQKE LQELKALKLA  240
QPLYMHMPAA TLTMCPSCER LGGGVGVGVV DGATKSPFSM APKPHFYNPF NNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890394.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-99HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2I4HM961e-155A0A2I4HM96_JUGRE; homeobox-leucine zipper protein HAT22-like
STRINGEOX917921e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]