PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 267aa    MW: 26416.6 Da    PI: 4.7235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05152173223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ C++ F ++  L  H+r+H
  XP_015889546.1 152 VCSVCKRDFGSWKALSGHMRSH 173
                     7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.016151178IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
PfamPF139121.2E-6153175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTNPKDSSEK SPAEKETQPQ QSQGGEEETA GAGGSSSSPP KEKGETAKSV AEVGGGSSSV  60
VPPRPTQTGA GRGGAPTRLQ PRAAASASRA VGSGGVGGTG GAGGEQGGGG GGGAGGGPTA  120
VATAARAPPS GSGGRAKRKA SEIIGPVGVE MVCSVCKRDF GSWKALSGHM RSHPERQWRG  180
IFPPPVEPRF AAAQGQQSNP PDQPQPPTGQ GVPEERVALD VDLNQPHQGE EEEGGEEASP  240
PPPEPEKDAG GGAFDLNMPP ASGDGDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889546.10.0PREDICTED: homeobox protein Hox-D11
TrEMBLW9SMQ72e-26W9SMQ7_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-12C2H2-like zinc finger protein