PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889403.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 394aa    MW: 44349.9 Da    PI: 5.391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C +sFs+   L  H+r+H
  XP_015889403.1  4 HKCKLCLRSFSNGRALGGHMRSH 26
                    79********************9 PP

2zf-C2H212.50.00044267289123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_015889403.1 267 YKCETCKKVFRSYQALGGHRASH 289
                     9***********99999998887 PP

3zf-C2H211.30.0011320342123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H r+H
  XP_015889403.1 320 HECPVCFRVFSSGQALGGHKRSH 342
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.34E-5331No hitNo description
PROSITE profilePS5015710.699431IPR007087Zinc finger, C2H2
PfamPF139121.0E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.052426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF1014473.4E-54352No hitNo description
SuperFamilySSF1014473.4E-5181204No hitNo description
PROSITE profilePS5015710.118267294IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-8267342No hitNo description
PfamPF139122.4E-11267291IPR007087Zinc finger, C2H2
SMARTSM003550.026267289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
PfamPF139125.2E-11320342IPR007087Zinc finger, C2H2
SMARTSM003550.19320342IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265320347IPR007087Zinc finger, C2H2
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEKHKCKLCL RSFSNGRALG GHMRSHMMNL PVPPKPEDEE ESPPPPPPPP PPQPQQTQSL  60
QPQPHPIQLT EEAESASSSS SSSDEEGTED GDEEKLGAYY GLRENPKRSI RLGDPEFSFA  120
VDAGSVVLQD RESETESSKN PTRRRSKRTR KSGMSELQYH HHHHQKIEEQ EEGVMNNNNK  180
IKFNKLSKTE SWAEPEPVSS VSDTTTEEDV AFCLMMLSRD KWKKQEQQRD EKEDQEEEQE  240
DEGERSLEDT DESEELKSSK NRTRGKYKCE TCKKVFRSYQ ALGGHRASHK KIKLSNPTYE  300
AELVQENAGT SSFIQDKKIH ECPVCFRVFS SGQALGGHKR SHVTGSSATN SVKSLIKFGG  360
DSLIDLNLPA PMDDDEISQI ELSAVSDAEF VKTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889403.10.0zinc finger protein ZAT9
TrEMBLA0A2C9WPI61e-152A0A2C9WPI6_MANES; Uncharacterized protein
STRINGcassava4.1_031439m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-46C2H2-like zinc finger protein