PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 681aa    MW: 75778.8 Da    PI: 7.5465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0016384223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC +C+  F +  n++rHir+H
  XP_015888868.1 63 KCDKCSLEFCSAINYRRHIRVH 84
                    7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1826289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MKSEDGNDSL DTIIRQAIGK EPFLSFSRAG DSPVQWIQLL HALDQQELPG WPLLSPLKVQ  60
MQKCDKCSLE FCSAINYRRH IRVHHRLKKL DKDSAKNRDI LGAFWDKLSL EDAKEVVSFK  120
NVTLEEVPGS TLIKALTTLI RKPGFSSLPH VYLKAGSALL DIVQARPSRF PISSKELFSI  180
LDDASERTFL SGPAVLMQRY VFDGEAGKIA LETKNLVACI SFLVEQKLVK AWLADKDAEA  240
LMFQKLLVEE EEAAQKRQAE LLERKRQKKL RQKEQKTKEQ RRGEKADDKE SIDEVPEAMP  300
LAETSNPSMA CDFRTPIPDM LHHVALSNVE SLNTDENVDP ESQPGFGCGQ SDSSTGPNGG  360
RRIVQGSSRR HPVSRWQALP KSQRRVLNSI HAGETFHAPK LGAIQNRGTH RDLRTARVWS  420
RKPKPEYDGE NLKARVEKEV LNEPDQIKNH EVLIGSISVT LGNCSEEGNI PSGACDDCMI  480
EHQIPKSNVQ DKPQRPNSAQ SGMSSSKVKL WRQVSRPGNK GPIPVHNDSR ESECDATAEK  540
GHSETLSSES CERLSAMDAY NGSIANGFMC PDETGNSAFS VQEAKAFLAE RWKEAIAADH  600
VRLVLGSDLE PSDCLEIQTD SEEAVSQSSK IHKRSIAGNE ENRLLKVETI ESPIPGPAKA  660
RFRTKPEKGV KIYIPKQKTN G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269ERKRQKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888857.10.0PREDICTED: uncharacterized protein LOC107423753 isoform X1
RefseqXP_015888864.10.0PREDICTED: uncharacterized protein LOC107423753 isoform X1
RefseqXP_015888867.10.0PREDICTED: uncharacterized protein LOC107423753 isoform X1
TrEMBLM5X2260.0M5X226_PRUPE; Uncharacterized protein
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-140C2H2-like zinc finger protein