PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888693.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 354aa    MW: 40462.3 Da    PI: 4.9211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27120180259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   gC ++k v+r +ed +++e+tY+g+H+++
  XP_015888693.1 120 DDGYCWRKYGQKDILGANYPRSYYRCTHRyvqGCLATKLVQRLNEDASILEVTYRGRHTCR 180
                     8***************************9999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-27111181IPR003657WRKY domain
SuperFamilySSF1182901.19E-24118181IPR003657WRKY domain
SMARTSM007746.0E-38119181IPR003657WRKY domain
PROSITE profilePS5081121.241120177IPR003657WRKY domain
PfamPF031068.0E-25120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEKTMDLEQK NLISELIQGK ELAKQLKRQI ELCSSQETRD LLAAQIVLSY EKAISLLNQS  60
AFHGETKPTI ESPSPFGSPR SEICDQDSDQ KDIFKKRKTM PRWTEKVKVC SESGLDGPTD  120
DGYCWRKYGQ KDILGANYPR SYYRCTHRYV QGCLATKLVQ RLNEDASILE VTYRGRHTCR  180
QSSHLATASA TLNKQEFKQK ENEITFRQHE KEKPKQPQKM LSDNVAGLKV KTEDLDTRED  240
DIFPLFSFPS TSTECEYVEN QIFSESMMEN NFMGSFSPPF ISPATSESNY LSVSPFRLIN  300
FGLRDNVQIS ESELTEILSA PTSVANSPIG DLDFQLNEDD FQLNFSFDNH ELFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-131201771569WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997QKDIFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888693.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_015888694.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_015889378.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_015889379.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A061E0I11e-135A0A061E0I1_THECC; WRKY DNA-binding protein 46, putative
STRINGPOPTR_0014s09190.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-49WRKY family protein