PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 859aa    MW: 93489 Da    PI: 6.6046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.4e-21141196156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  XP_015888672.1 141 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 196
                     688999***********************************************999 PP

2START212.31.8e-663575821206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W++s     e++n++e+l++f++  +     + +e++r++gvv+ ++  lve+l+d+  +W e+++    + +t+
  XP_015888672.1 357 ELALAAMDELVKMAQTDEPLWMRSLeggrEILNREEYLRTFSPCIGlkpngFVSETSRETGVVIINSLALVETLMDSH-RWAEMFPcviaRTSTT 450
                     5899**************************************99999***9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +   +s+  +++lpSg+++++++ng+skvtwveh
  XP_015888672.1 451 DVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGaPPSFLHCRRLPSGCVVQDMPNGYSKVTWVEH 545
                     *********************************************************99999999****************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++l+h+l+r+l++sg+ +ga++wvatlqrqce+
  XP_015888672.1 546 AEYDESLVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 582
                     ***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-20123198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-22128198IPR009057Homeodomain-like
PROSITE profilePS5007117.216138198IPR001356Homeobox domain
SMARTSM003891.7E-17139202IPR001356Homeobox domain
CDDcd000862.19E-18140198No hitNo description
PfamPF000462.3E-18141196IPR001356Homeobox domain
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PROSITE profilePS5084845.088348585IPR002913START domain
SuperFamilySSF559611.7E-33349582No hitNo description
CDDcd088752.74E-125352581No hitNo description
PfamPF018526.3E-58357582IPR002913START domain
SMARTSM002341.7E-53357582IPR002913START domain
SuperFamilySSF559611.53E-23614784No hitNo description
SuperFamilySSF559611.53E-23812852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MSFGGFLENS TGGGGGARIV ADISYTTTST NSPNSNTINN NNNHNMPSTT ALAQPRLVTQ  60
SLTKSMFNSP GLSLALQTNT NIDGQGDHHH HHHQVTRMGE NFETNVGRRS REEEHESRSG  120
SDNMDGGSGD DQDAADNPPR KKRYHRHTPQ QIQELEALFK ECPHPDEKQR LELSRRLCLE  180
TRQVKFWFQN RRTQMKTQLE RHENSLLRQE NDKLRAENMS IRDAMRNPIC SNCGGPAIIG  240
EISLEEQHLR IENARLKDEL ERVCALAGKF LGRPISSLAT SIAPPLPSST LELGVGTNGF  300
GNLSTVATTM PLGPDYGSGG GISGSLTVVP PLQQPPTTTR QAASVLDRSM ERSMFLELAL  360
AAMDELVKMA QTDEPLWMRS LEGGREILNR EEYLRTFSPC IGLKPNGFVS ETSRETGVVI  420
INSLALVETL MDSHRWAEMF PCVIARTSTT DVISSGMGGT RNGALQLMHA ELQVLSPLVP  480
VREVNFLRFC KQHAEGVWAV VDVSIDTIRE TSGAPPSFLH CRRLPSGCVV QDMPNGYSKV  540
TWVEHAEYDE SLVHQLYRPL LSSGMGFGAQ RWVATLQRQC ECLAILMSST VPARDHTAAA  600
AAITASGRRS MLKLAQRMTD NFCAGVCAST VHKWTKLNAG NVDEDVRVMT RKXXXDPGEP  660
PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK GQDPGNCVSL  720
LRASAMNANQ SSMLILQETC IDAAGSLVVY APVDIPAMHI VMNGGDSAYV ALLPSGFAIV  780
PDGPGSRGPM ATTTSNGNNA SSNGGDGPHR VSGSLLTVAF QILVNSLPTA KLTVESVETV  840
NNLISCTVQK IKAALHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888672.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLM5XQZ70.0M5XQZ7_PRUPE; Uncharacterized protein
STRINGEMJ214550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119234106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]