PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888126.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 360aa    MW: 41114.1 Da    PI: 5.5016
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.78e-38411332103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i+ed++++++isws+ +nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k+ll++
  XP_015888126.1  41 FLNKTYDIVEDPSTNHIISWSRGNNSFVVWDPQNFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLKGQKHLLKN 126
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_015888126.1 127 IRRRKTS 133
                     ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.07E-3636130IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6237130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNPQVQVKQE FPGASSSSYS GKPSVVPQPM EGLHDSGPPP FLNKTYDIVE DPSTNHIISW  60
SRGNNSFVVW DPQNFAMSLL PRYFKHNNFS SFVRQLNTYG FRKVDPDKWE FANEGFLKGQ  120
KHLLKNIRRR KTSTQPQASQ QPLDPCVEVG RFGLDGEVER LRRDKQVLMV ELVKLRQQQQ  180
NTRTYIQSME DRLKRTELKQ QHMMNFLARA MQNPNFVQQL LQQKDKRKEL EEAITKKRRR  240
TIEQGPSNVV EADDLGQAGG GAFVTMGTND YGHIPEFQVP EVEDIAIDIP GIGGSQKNGE  300
EEVLLVQHES RSKYIDDGFW LNLLNEATEE KTDIVGVEHE DEEDVDALVE QLGYLASSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-273613415124Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225239KRKELEEAITKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888126.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-137HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061EL961e-173A0A061EL96_THECC; Heat stress transcription factor A-6b, putative
STRINGGLYMA20G28870.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-131heat shock transcription factor A6B