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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HSF | ||||||||
Protein Properties | Length: 360aa MW: 41114.1 Da PI: 5.5016 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 120.7 | 8e-38 | 41 | 133 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+i+ed++++++isws+ +nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F kg+k+ll++ XP_015888126.1 41 FLNKTYDIVEDPSTNHIISWSRGNNSFVVWDPQNFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLKGQKHLLKN 126 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_015888126.1 127 IRRRKTS 133 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.07E-36 | 36 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.0E-39 | 37 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-62 | 37 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-32 | 41 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 80 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MNPQVQVKQE FPGASSSSYS GKPSVVPQPM EGLHDSGPPP FLNKTYDIVE DPSTNHIISW 60 SRGNNSFVVW DPQNFAMSLL PRYFKHNNFS SFVRQLNTYG FRKVDPDKWE FANEGFLKGQ 120 KHLLKNIRRR KTSTQPQASQ QPLDPCVEVG RFGLDGEVER LRRDKQVLMV ELVKLRQQQQ 180 NTRTYIQSME DRLKRTELKQ QHMMNFLARA MQNPNFVQQL LQQKDKRKEL EEAITKKRRR 240 TIEQGPSNVV EADDLGQAGG GAFVTMGTND YGHIPEFQVP EVEDIAIDIP GIGGSQKNGE 300 EEVLLVQHES RSKYIDDGFW LNLLNEATEE KTDIVGVEHE DEEDVDALVE QLGYLASSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-27 | 36 | 134 | 15 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 239 | KRKELEEAITKKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888126.1 | 0.0 | PREDICTED: heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-137 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A061EL96 | 1e-173 | A0A061EL96_THECC; Heat stress transcription factor A-6b, putative | ||||
STRING | GLYMA20G28870.1 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-131 | heat shock transcription factor A6B |