PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 267aa    MW: 29696.1 Da    PI: 9.8997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000117294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_015887959.1 72 YTCSFCKREFRSAQALGGHMNVH 94
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-66998No hitNo description
PfamPF139129.6E-77296IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.247299IPR007087Zinc finger, C2H2
SMARTSM003550.00387294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERKNNSVMN NSLKDHGIVT KAIRDSKTMM SNNQSNKAAR DHSSWNSSCD NNHHQSYEED  60
YMNGFSWPPR SYTCSFCKRE FRSAQALGGH MNVHRKDRAR LRQSSPNDHQ GQYTTFLNLN  120
LKPNPNPNFA SSSSSFSSAS STRLPFVPFT SSLSSLISPP LSSLSSPPPS LSSAEKWTTA  180
LDHGALLDHH HHPLSTKVPD SAKILKNERS ERLFHGSVGG DVGNFAKKEV CKKHLKKAEK  240
TVRLDLGIGM VGDAKEDIDL ELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-146794229superman protein
2l1o_A4e-146794229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887959.10.0transcriptional regulator SUPERMAN
STRINGXP_008224395.17e-57(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-25C2H2 family protein