PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886183.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 364aa    MW: 42066.4 Da    PI: 9.5006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F +++ L++H +  H
  XP_015886183.1 119 YLCRVCGRKFYNNEKLVNHFKQlH 142
                     56*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.3E-937120IPR029060PIN domain-like
SuperFamilySSF576675.97E-5118144No hitNo description
PROSITE profilePS5015711.552119147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061673.51E-15136271No hitNo description
PfamPF019362.0E-8191266IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.3E-9204265IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVVFLKLGNF FFTIQSRRLE KLSPFSVLNR FCHFAPKPQE NVAIFWDLDN KPPDPFPPYA  60
AAIKLKATAS SFGFVQHMIA YANRHSFSYV PPVVRERRKE RKLLNQLENK GVIKPVEPYL  120
CRVCGRKFYN NEKLVNHFKQ LHEREHMKRL NQIESARGSR RVKLVGKYSM KMEKYKNAAR  180
DVLTPKVGYG LADELKRAGF WVQTVSDKPQ AADVALKKHM VDMMDQRGAQ CFVLVSDDSD  240
FVDVLNEAKL RCLKTVVVGN VNDGTLKRIA DAGFSWKEIM MKKAKKEAVS VVGKWKDRDV  300
LKRLEWTYDP QIERNVYRSD DEDEDLLTEG SVEGVHDGCM QEDNSSSWWE IDSDSDIIMS  360
QRCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102ERRKERKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886183.10.0PREDICTED: uncharacterized protein LOC107421439
RefseqXP_015886176.10.0PREDICTED: uncharacterized protein LOC107421439
RefseqXP_015886166.10.0PREDICTED: uncharacterized protein LOC107421439
TrEMBLA0A061G4Y50.0A0A061G4Y5_THECC; Zinc finger family protein
STRINGPOPTR_0003s11420.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-122C2H2 family protein