PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 633aa    MW: 67898 Da    PI: 6.5663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30362420259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  XP_015885330.1 362 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTILITTYEGNHNHP 420
                     7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-33346422IPR003657WRKY domain
SuperFamilySSF1182901.22E-27354422IPR003657WRKY domain
PROSITE profilePS5081129.516356422IPR003657WRKY domain
SMARTSM007741.0E-36361421IPR003657WRKY domain
PfamPF031061.9E-26363420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDKGWGLTLN SDCIGFFLNK PPPSAAAASA VKLDHNKRNH PFAAASRMFS GAEFPVKLGR  60
TDMDHTSSDD NNNNRLVVDE VDFFSDKNRP AATAADDDGS KTIGFVSVKK ENSHGDVAAR  120
PGLDVNTGLH LLTANTGSDQ STVDDGISSD VEDKRAKNIE LAQLQGELRH MNAENQKLKD  180
MLTQVTNNYS ALQMHLVSIM QHQQINHQKN QELDDQTVEG KSDDKKNHHH EIGGGGAIVP  240
RQFLDLRPSS ATAETDDQVS NSSSEDRTRS ATPQNVEVAS KDYVGKSEIA PFDQENSTFP  300
DGKRLGREES PESETQGWVP NKVPKLNNGG SKPIDQQQSS SEATMRKARV SVRARSEAPM  360
ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCADDRTILI TTYEGNHNHP  420
LPPAALAMAN TTAAAASMLL TGSTSSADGL MNPNLLARAI LPCSSNMATI SASAPFPTVT  480
LDLTNNSPNP LQFQRPPQPQ FQIPFAAAGQ VPQNFASSST PSLPQVFGQA LYNQSKFSGL  540
QLSQEMGSSQ LGQQAAQMLQ TQPASFADTV SAATAAITAD PNFTAALAAA ISSIISGGHP  600
NNNNNNTNTS SNSNITTSNN NNNNSKIGSF TGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22348424176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885330.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-166WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGVIT_10s0116g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-146WRKY family protein