PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 255aa    MW: 26899.5 Da    PI: 8.1799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002995117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F++   L  H  +H
  XP_015885055.1  95 YKCSVCNKAFPSYQALGGHKASH 117
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.43E-995117No hitNo description
PROSITE profilePS501579.95195117IPR007087Zinc finger, C2H2
PfamPF139125.9E-1495119IPR007087Zinc finger, C2H2
SMARTSM003550.005795117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576677.43E-9146173No hitNo description
PfamPF139123.0E-13151175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452151173IPR007087Zinc finger, C2H2
SMARTSM003550.16151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MALEALNSPT TATPSFHYDD ANLHNLEPWA KRKRSKRSRL DHTPTEEEYL ALCLIMLARG  60
GAAATTNSFA ASQRHQSPSP APQPEAATSA TKLSYKCSVC NKAFPSYQAL GGHKASHRKG  120
NGGGGEDQST SSTTTTSATT GAVSNGTGRS HECSICHKSF PSGQALGGHK RCHYEGGASG  180
GGATTSAVTS SEGVGSTTHT NSQNHSHRDF DLNLPALPEF SRGFFISGDD EVESPLPTKK  240
PRLSVTPKTE VPEHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885055.10.0PREDICTED: zinc finger protein ZAT10-like
RefseqXP_015900551.10.0PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962894e-71ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA9PJS71e-104A9PJS7_9R
TrEMBLB9GNQ31e-104B9GNQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12010.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-54salt tolerance zinc finger