PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 212aa    MW: 23020.2 Da    PI: 8.2827
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-292103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++Cvl+  +     p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_015885030.1   2 SCNGCRVLRKGCSDKCVLRSSLhwidsPEAQGNATLFLAKFFGRSDLISFISAVPDHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQT 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l 
  XP_015885030.1  97 AVETVLS 103
                     *998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.9561107IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDKCVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLIS FISAVPDHQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQTAVET VLSGGVLRPI AGILTQNVDE  120
SSETYTRNAC MLPNLYYPSL PSIYNPKQGQ PLDTDMSLST NFGTGGRGRA WSFSVEKRLR  180
DSVSVSSEES VITTGGLGIG ERKERKLLNL FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885030.11e-156PREDICTED: LOB domain-containing protein 39-like
RefseqXP_015900491.11e-156PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE88e-63LBD39_ARATH; LOB domain-containing protein 39
TrEMBLM5XI771e-96M5XI77_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s12020.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-62LOB domain-containing protein 39