PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 317aa    MW: 34886.2 Da    PI: 8.3589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30134192158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh
  XP_015884720.1 134 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSLLVATYEGEHNH 192
                     58***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-29125195IPR003657WRKY domain
PROSITE profilePS5081126.877129195IPR003657WRKY domain
SuperFamilySSF1182906.15E-25131195IPR003657WRKY domain
SMARTSM007745.3E-34134194IPR003657WRKY domain
PfamPF031062.4E-24135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDTKSVNISL DLNLNPLHRI DELAPQAASA GALAEELNRI STENKKLAQK LTAMCESYNA  60
LQNHFREMIS KNPDFLRKRK PDSEDYNSAI GFTNNGNTEC SSSDEDSYKW PRAIKSKLSR  120
VCVRTDSSNT SLLVKDGYQW RKYGQKVTRD NPSPRAYFKC SFAPSCPVKK KVQRSAEDPS  180
LLVATYEGEH NHIHPSQAEI SISPSQAAKL VSSSSLPISA ASTISNNRSL STSTLTLNLM  240
EPALGACNTS TNTSSNNMNA KLIAVQENIN EAAPAGFMQQ FLVKEMASSL TRDPNFTAAL  300
ASAISERMVD LTHMEKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22119195174WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884720.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A061GIH64e-99A0A061GIH6_THECC; WRKY transcription factor, putative
STRINGVIT_04s0008g05760.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.25e-67WRKY DNA-binding protein 18