PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 371aa    MW: 40189.6 Da    PI: 10.05
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31299356359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  XP_015884353.1 299 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGDHNHS 356
                     99************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-18250295IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33285356IPR003657WRKY domain
PROSITE profilePS5081130.251292358IPR003657WRKY domain
SuperFamilySSF1182909.55E-27294356IPR003657WRKY domain
SMARTSM007745.3E-37297357IPR003657WRKY domain
PfamPF031069.2E-27299355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAVELMMGYG VDSFVAKMEE NAVKEAASAG IQSVEKFIRL ISQQQQQYQQ QQASSSSAEA  60
GPMEYGTVAD VAVNKFKKVI SLLDKGRTGH ARFRRAPVAP SASSSPQPSH QQSLNQDTGL  120
SVPQHNHRKP EQPSSAFKVY CPTPVVRLPP LSLPLPLPLP QPHSHGLQTH HNQLNASSAM  180
LTKNGPVEKK DSTSTIKFSP SPPISAANSF MSSLTGDTES LQPSLSSGFQ ITNMSQSSAG  240
KPPLSSSSLK RKCNSVDDAA LHCGSSSGRC HCSKKRKSRV KRVIRVPAIS MKMADIPPDD  300
YSWRKYGQKP IKGSPHPRGY YKCSSLRGCP ARKHVERALD DPTMLIVTYE GDHNHSHSIT  360
EAAAALILES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21285355271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884353.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-117WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLW9SE621e-169W9SE62_9R
STRINGSolyc04g078550.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-82WRKY DNA-binding protein 7