PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 303aa    MW: 34277.1 Da    PI: 8.3161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035127149123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  XP_015884245.1 127 FECQYCFKEFANSQALGGHQNAH 149
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5119153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.06E-6124154No hitNo description
PROSITE profilePS5015711.406127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MNPLTHWLCL FKIYLDKHLS TVQICCKVKS SPSYQAMEND ALNRLSPPCD GENGHSAGSS  60
AEKKLKLFGF ELNPCNRIDE SSLKGSAEGD ESVNSSNSVS YAKDIQKLSS KEKSSNNNTT  120
EPEDKKFECQ YCFKEFANSQ ALGGHQNAHK KERMKKKRLQ LQARKASINY YLQPFQNNLG  180
FAYHAGSGTN TTTTPWFYDP SSYGSEFKFY EESQQISFDT FDHPDAHLQG SKWYSLPPNN  240
NPVQHDSCNR FTLTHIERSQ HENRPVLFKP SPLSVSKQSC KSLDLQLGLS FQSNIRSSSR  300
SEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884245.10.0PREDICTED: zinc finger protein 5
TrEMBLA0A061E6R57e-99A0A061E6R5_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGVIT_01s0026g00850.t014e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-16zinc finger protein 5