PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883400.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 538aa    MW: 58694.4 Da    PI: 5.087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11354396754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  XP_015883400.1 354 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 396
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16350414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9353396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16354409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-12354400No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLSRMNGVVW MENREDENDN NNNNGVAQNK DEMGSLSSFK SMLEIEDDWY VNGNGNGIQN  60
HSDVRDISFS QSLADPESLL LQQVDSSSSC SPSSSLFNNL DPSQVQFFLP PKSTLSSLLN  120
GISNNPLDHG FDLSGCEIGF IGNQVPNASN VLSRGAMVLN GFTDLSSNNQ LNTHNLCSDP  180
QISTTVVPQL AEKGACFSSF RGFDDSGNTQ FLNRSKLLRP LESFPSMGAE PNLFQKRAAL  240
RKNLAENGGE NLGVPGSETG IVSNGIEGGD RGKREMVGVE DENKKRKMSG GDDLEDGGSI  300
DASGLNYDSD EFTENTTKLE ENGNSGGNSS NAKSTVTGGD QKGKKKGLPA KNLMAERRRR  360
KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQRI NDLHNELEST PPGSSLTPSN  420
SFHPLTPTTP TLRNCIKEEL CPSSLPSPNG QPARVEVRVR EGRTINIHMF CSRRPGLLLS  480
TMMALDNLGL DIHQAVISCF NGFSMDIFRA EQCKESQDVH PEHIKSVLLD SAGFHGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343361KKKGLPAKNLMAERRRRKK
2355362ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883400.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-130ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW820.0A0A0S2CW82_PRUMU; Inducer of CBF expression a
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-128bHLH family protein