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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015883400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 538aa MW: 58694.4 Da PI: 5.087 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.4e-11 | 354 | 396 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_015883400.1 354 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 396 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.58 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 350 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 353 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-14 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 354 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-12 | 354 | 400 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MLSRMNGVVW MENREDENDN NNNNGVAQNK DEMGSLSSFK SMLEIEDDWY VNGNGNGIQN 60 HSDVRDISFS QSLADPESLL LQQVDSSSSC SPSSSLFNNL DPSQVQFFLP PKSTLSSLLN 120 GISNNPLDHG FDLSGCEIGF IGNQVPNASN VLSRGAMVLN GFTDLSSNNQ LNTHNLCSDP 180 QISTTVVPQL AEKGACFSSF RGFDDSGNTQ FLNRSKLLRP LESFPSMGAE PNLFQKRAAL 240 RKNLAENGGE NLGVPGSETG IVSNGIEGGD RGKREMVGVE DENKKRKMSG GDDLEDGGSI 300 DASGLNYDSD EFTENTTKLE ENGNSGGNSS NAKSTVTGGD QKGKKKGLPA KNLMAERRRR 360 KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQRI NDLHNELEST PPGSSLTPSN 420 SFHPLTPTTP TLRNCIKEEL CPSSLPSPNG QPARVEVRVR EGRTINIHMF CSRRPGLLLS 480 TMMALDNLGL DIHQAVISCF NGFSMDIFRA EQCKESQDVH PEHIKSVLLD SAGFHGMI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 343 | 361 | KKKGLPAKNLMAERRRRKK |
2 | 355 | 362 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015883400.1 | 0.0 | PREDICTED: transcription factor ICE1-like | ||||
Swissprot | Q9LSE2 | 1e-130 | ICE1_ARATH; Transcription factor ICE1 | ||||
TrEMBL | A0A0S2CW82 | 0.0 | A0A0S2CW82_PRUMU; Inducer of CBF expression a | ||||
STRING | POPTR_0015s11650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2414 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 1e-128 | bHLH family protein |