PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882282.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 264aa    MW: 30714.2 Da    PI: 9.0465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882282.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-0598121123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+ksF+    L +H+ + H
  XP_015882282.1  98 WQCGYCKKSFRAEKFLDQHMDNrH 121
                     58******************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.78798121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVENYIVFSF ASGFSSLLRF DYEGSAASRT LKQEQEHAHQ VHCSRERSRA AWKIIEEYLM  60
PFVEREHYSI SSKCRLHPDN DLFRDQEEHK IHFDINEWQC GYCKKSFRAE KFLDQHMDNR  120
HHNLLNVNGS KCLADLCGAL HCDHVMKTKS TKAKCNPAAV ARNHHLCESL ADSCFPIHQG  180
PSASRLHELF LRQFCDAHSC SRKQKPFSRG GKKQTSVLYL AVSILTMMLL PLFYLLVYLH  240
QRDMRMRTQE LRRIPQSGRK AKGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882282.10.0PREDICTED: uncharacterized protein LOC107418119
TrEMBLW9RH161e-148W9RH16_9R
STRINGPOPTR_0015s10200.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-114C2H2-like zinc finger protein