PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 472aa    MW: 51190.5 Da    PI: 9.1232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-055777323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_015881278.1 57 CEICGKGFQRDQNLQLHRRGH 77
                    *******************88 PP

2zf-C2H213.50.00022131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_015881278.1 131 WKCEKCSKRYAVQSDWKAHSKTC 153
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-65477No hitNo description
Gene3DG3DSA:3.30.160.604.1E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4895577IPR007087Zinc finger, C2H2
SMARTSM003550.0765577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035526096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-6126151No hitNo description
SMARTSM00355130131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAEEAISSGF VQNPISGGSD NPPAVKKKRN LPGTPDPEAE VIALSPKTLM ATNRFLCEIC  60
GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE PRKRVYVCPE KSCVHNHPSR ALGDLTGIKK  120
HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS KTCGTREYKC DCGTLFSRRD SFITHRAFCD  180
ALAEETARLN AASNISNSMA AGNINYHFIG TSLAPTMATQ PFPSVFKPIS SNAETIIRQT  240
TRGLSVWMGQ GSQGHEPLAA NNTTLQDQIH QFGPAVSSVG TLFGDPLVSC SNPPAPSDYQ  300
LNWVFGSKIS SNNAHEDQLT SSTTSLPLSD VKGGGTQLIN VPSLYSTQHH SHQTPSANMS  360
ATALLQKAAQ IGATSTDSSF LGSFGLKCSN NNGGQVQEGN KFCGLYCSNA MSRSHGSSVE  420
NPEADVPQMY PAAKRRHVQS SEEGAGRGGQ TRDFLGVGVQ TICHPSSING WI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881278.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-158IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A061E4I00.0A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-149C2H2-like zinc finger protein