PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880112.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 260aa    MW: 27947.9 Da    PI: 4.8171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035106128123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_015880112.1 106 FSCNYCQRKFFSSQALGGHQNAH 128
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-6104133No hitNo description
PROSITE profilePS5015711.344106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKATFDLEVE ASLANDSDVS SQVASNVSIQ ETSAGSSNES LTNSSHLANL TTAQPGLEQV  60
CLDLTLQFNN EDFGGRDSIG LSLSSTSESS NEPSSHNTAA AIPRVFSCNY CQRKFFSSQA  120
LGGHQNAHKR ERTLAKRAMR MSIFSEKYAG LASLPIHGSS FRSLGIKAHS SVHDGIAPLV  180
RPSDIRTSAR FEQGYLGVPI FLEDDEAELL WPGSFRQVAE TNSTNTLPGF VLTGSSNLNF  240
VEVTPTADID DSTPDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880109.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_015880110.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_015880111.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_015880112.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_015880113.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392632e-54ZFP4_ARATH; Zinc finger protein 4
TrEMBLW9STR21e-133W9STR2_9R
STRINGPOPTR_0017s02490.11e-123(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-55zinc finger protein 4