PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015879359.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 513aa    MW: 55574.8 Da    PI: 7.8001
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015879359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-30219278159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_015879359.1 219 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCVEDMSILITTYEGTHNHP 278
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31205280IPR003657WRKY domain
SuperFamilySSF1182905.49E-27213280IPR003657WRKY domain
PROSITE profilePS5081128.323214280IPR003657WRKY domain
SMARTSM007745.2E-36219279IPR003657WRKY domain
PfamPF031061.8E-26220278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MPNSGGGIEE KRVESVHHHA GNCSPEVRKV ELQNAKAEMS EVREENERLK MMLQNIEKDY  60
KSLQLRFFDI FNREAASKKP TDSAPDHHHH DVEETEEPQL VSLSLGIKSP VESKKDENST  120
SSSLSKNNVD DNEDLRANLT LGLGTTRKQV SSKLTVSDPS PTNSSEAHQA PGAGDALQPS  180
SKRTSTSKTM RNGDDEISQQ AHAKRARVSV RAKCDTPTMN DGCQWRKYGQ KIAKGNPCPR  240
AYYRCTVAPA CPVRKQVQRC VEDMSILITT YEGTHNHPLP ISATAMASTT SAAASMLLSG  300
SSTSSQTPTL TANAAVPTTS LLHNINGTNF GLFDNLRTKP YYLPNPSSPL FPTVTLDLAS  360
SPSFSSSPHF NRLSSTFASP SRIPSSSPSF YSSEPNILPP VWGNGYLIGK QSSPQEYFYQ  420
AKQHCVEKNS NQAYAQEALT ESLTKAITSD PSFKSVIAAA ISSMVGESES QVKQGGGLER  480
FGQRLATWPG DHQAVAEAVV SQSPLTQNGK GCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-212192801777Probable WRKY transcription factor 4
2lex_A4e-212192801777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879359.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A061EM501e-158A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
STRINGPOPTR_0017s11570.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-91WRKY DNA-binding protein 72