PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015877493.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 402aa    MW: 44252.6 Da    PI: 4.8264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015877493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1780130155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f +a eAa a+++a+++++g
  XP_015877493.1  80 CSYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPSAMEAALAYDEAARAMYG 130
                     67*****999.**********8...2.359***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-2980139No hitNo description
PfamPF008471.8E-1280130IPR001471AP2/ERF domain
SMARTSM003804.2E-3581144IPR001471AP2/ERF domain
PROSITE profilePS5103221.1481138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3081139IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2081138IPR016177DNA-binding domain
PRINTSPR003677.1E-98293IPR001471AP2/ERF domain
PRINTSPR003677.1E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGALDQGINT LHLPFDSTRK RKTRSRRDGN SVAETLARWK EYNNRLDSGS DEGKPLRKVP  60
AKGSKKGCMK GKGGPDNSRC SYRGVRQRTW GKWVAEIREP NRGNRLWLGT FPSAMEAALA  120
YDEAARAMYG PCARLNLPNI SDYSLFRDSC SVTTPSGSSS VATPAGSDST TTSNHSEVCA  180
DEDSKVRPIA AHVKSENEGE SRINPWLSTD MGDTKTTAAH VKSENESESR SNPWPSTVMG  240
DTKTSSVVEP EAKDEATTKY IKSEAKDEHL DVEDYNWIDG GEIGDDFLQN FTMDEVFDVD  300
ELLGIMDRNP LQDSGLVQDL GHNSGQGGFL NSDNLPSEKP SHLSYQLQNP DAKLLGSLHH  360
MDQAPSAVDY SFDFLKPGRQ EDNNSGIEGQ GYLNLTFPDL EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1682138360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722TRKRKT
22027RKTRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015877493.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877493.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A2P5ECK41e-142A0A2P5ECK4_TREOI; AP2/ERF transcription factor
STRINGXP_010087025.11e-137(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-39ERF family protein