PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015876671.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 395aa    MW: 44137.3 Da    PI: 7.3025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015876671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00096166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_015876671.1 166 YECKTCNRTFPSFQALGGHRASH 188
                     99**********99999998887 PP

2zf-C2H214.69.4e-05260282123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ F++   L  H+r+H
  XP_015876671.1 260 HECSICGTEFTSGQALGGHMRRH 282
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-5164192No hitNo description
PfamPF139123.8E-13165190IPR007087Zinc finger, C2H2
SMARTSM003550.052166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SuperFamilySSF576679.21E-6256283No hitNo description
PfamPF139129.5E-12259284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743260282IPR007087Zinc finger, C2H2
SMARTSM003550.012260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEAAAAEAAI AAAQEEVILM GSQEHTHLIA KGKRTKRQRP QSPIPFPTTT NSSTGDGGGS  60
VGDPENTNNI LTNTKNSNIN HFSPSSSSPE PELFQDSTEE EEDMANCLIL LAQGQSRGAT  120
TMTMSSSPPK QQIIANMADH EGNNYKYNSR RFLETGKGAS SGYYVYECKT CNRTFPSFQA  180
LGGHRASHKK PRAAAMAEEK KLFGLVSDDE EMTSFKNNNN NNNNVSSVLS LQLSHHNHHH  240
RSLYGNHNNN NNNSNKNKVH ECSICGTEFT SGQALGGHMR RHRAPVGTNT TLSLTPMAVE  300
HVDHHHHHNH QQQQQQQQQQ QQQQQQQQQQ QPKKPRTVLS LDLDLNLPAP EDDHREHKFS  360
FVTQQQQQQQ KQQQQQQQQQ SSMVFSAPAL VDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337PKKPRTV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015876671.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876671.10.0zinc finger protein ZAT5
TrEMBLA0A1Q3CDB31e-112A0A1Q3CDB3_CEPFO; Zf-C2H2_6 domain-containing protein
STRINGEOY188511e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-67C2H2 family protein