PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family RAV
Protein Properties Length: 387aa    MW: 44340.5 Da    PI: 6.5627
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.8e-0856102254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ++kGV    ++g W A+I+       + +r++lg+f ++  Aa a++ a+ kl+
  XP_015875942.1  56 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSETTAAMAYDSAAIKLR 102
                     789996.566899****999......44**********99************98 PP

2B389.13.4e-28179272185
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pkk+a ++         +   +    +++l+++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lk++D+v+F+
  XP_015875942.1 179 FQKELTPSDVGKLNRLVIPKKYAVKYfpyicenldE---NmvlDDIELVFYDKLMRTWKFRYCYWRSSQSFVFTRGWNRFVKEKNLKANDVVTFY 270
                     99**************************99996652...23347899***********************************************9 PP

                     E- CS
              B3  84 ld 85 
                       
  XP_015875942.1 271 TC 272
                     44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.59E-2256113No hitNo description
SMARTSM003809.6E-2056117IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1456112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-1656111IPR001471AP2/ERF domain
PROSITE profilePS5103216.67456111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-32176278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-26178270No hitNo description
SuperFamilySSF1019363.79E-27178274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323179294IPR003340B3 DNA binding domain
SMARTSM010196.8E-20179285IPR003340B3 DNA binding domain
PfamPF023622.2E-25179273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDHDDASSMI SSPKLMMNNN IAAAAETSDS NDTIYANIHQ NKRARLDANA ESSFGKFKGV  60
VPQQNGHWGA QIYANHQRIW LGTFKSETTA AMAYDSAAIK LRSGDTHRNF PWTSLTLQEP  120
YFQNHYSTEA ILNMIKDGSY PSKFADFVMR TQSKSKQIDI SVNQVKVHGD TQYMCKQLFQ  180
KELTPSDVGK LNRLVIPKKY AVKYFPYICE NLDENMVLDD IELVFYDKLM RTWKFRYCYW  240
RSSQSFVFTR GWNRFVKEKN LKANDVVTFY TCESNNDHTG DKKAGQAFCL IDVSHNHSNI  300
NNVGDDHRDH NIHESNKCFE EEDEEEEEEV ENHVGLMLGH KFGGNSCIKF DSKAAAGDLQ  360
CKYKEAAAVQ VSNEEDKGFR LFGVRIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-3017526910100DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875942.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-107RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM5W2M91e-142M5W2M9_PRUPE; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein