PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875499.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GeBP
Protein Properties Length: 420aa    MW: 46193 Da    PI: 4.6606
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.95.7e-37135233297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     lfqrlw++eDei lLqG++d+++++gk   + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+s+
  XP_015875499.1 135 LFQRLWTDEDEIELLQGFLDYTSQRGKtthHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEISR 229
                     79*************************5433345************************************************************* PP

          DUF573  94 kiWg 97 
                     kiW 
  XP_015875499.1 230 KIWS 233
                     ***6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-35136233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASHHDDAVL PEEDLDSSSQ DDEEDDVVDD DEDDDDVINS ASPSTSSAGA DSLPVSLPLT  60
TATSTATTTT TSTTSVVTVA LPSLPNGEPP PTLATTVIAN LSDPTRHRII DHGNDATLAL  120
QPEEKKPALD DSRRLFQRLW TDEDEIELLQ GFLDYTSQRG KTTHHGQNDT ALFYDQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVLNKISS GKEFSFKSPH DQATFEISRK IWSNLGRIGA  240
EDNALDDDDP NPNPNNPNSF NMELKSEDTG AFFAEKKTPR SRKRSRPQTT ALRTADEKRG  300
FIDNSASKDI TNNSGGNSKI SGNNSVQGMI EESLKSCLSP LLKELLSNAI GGPCGSRGFG  360
LALNPMPLTF GGPSMNFGSE VVDEKWRKQQ ILELEVYSKR LELVQDQIKS ALEELRSKGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875499.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLW9QKD41e-155W9QKD4_9R
STRINGGLYMA19G43180.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-58DNA-binding storekeeper protein-related transcriptional regulator