PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875452.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GeBP
Protein Properties Length: 393aa    MW: 43780.8 Da    PI: 7.039
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57379.45.5e-25132238497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgk...........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgk..epsfskehd 85 
                     +  ws++De++lL+ ++d+++k+ k            +s+  + fy++v+ +++f++sksqlveK+rrLK+K+++k+k++ +g   +++f+++hd
  XP_015875452.1 132 RINWSQDDELLLLRSFLDYTTKKLKtgnnqqqtdasTSSSSSSSFYDQVEPQLKFRFSKSQLVEKLRRLKRKYHNKRKNSTTGPciDFRFKNPHD 226
                     445****************8876444435444444333445678***********************************88885448999***** PP

          DUF573  86 qkifelskkiWg 97 
                     + +fe+s+kiW 
  XP_015875452.1 227 KATFEISHKIWS 238
                     ***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-21134238IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSVDNPAING DGERKLWFNG AVKKMTWPLV SWIMSSSSSS SSSSSSSSEY HDEDEVEISC  60
QAKDNAGIDD DDNSATPSME TPNQSLSTAV TIAIPGILDN SASSSKRRRL DNVTLALPCF  120
EKKKESPQQK MRINWSQDDE LLLLRSFLDY TTKKLKTGNN QQQTDASTSS SSSSSFYDQV  180
EPQLKFRFSK SQLVEKLRRL KRKYHNKRKN STTGPCIDFR FKNPHDKATF EISHKIWSTS  240
NNNNSIGDHE EEISPLDLYI VKVKSEEDVI DNNYNNSSGD RMLMMRPQTR SQCVAAAGLG  300
SKRSVVEEEG SLLINNNNDD NKGGGTPAAL KPIPVSLEGR GIKLGGGGEV VDEKWKKQQI  360
MELEVYSKRL ELVQEQVKTT LEKLRSMGST TSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875452.20.0probable transcription factor At3g04930
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-22DNA-binding storekeeper protein-related transcriptional regulator