PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875193.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YC
Protein Properties Length: 261aa    MW: 29015.8 Da    PI: 6.3399
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.2e-56801831101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_015875193.1  80 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 174
                     89******99999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_015875193.1 175 VDIVPREDL 183
                     ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-3373174IPR009072Histone-fold
PfamPF008081.6E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDHQGHNQAQ SMGMVGGGVQ MAYGANPYQS NQMTGGPNPS SVASLGAIQS TSQPGGAQLA  60
QHQLAYQHIH QQQQQQLQQQ LQSFWANQYQ EIEKVTDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR  180
EDLKDEVVAS IPRGTVPVGG PADALPYCYM PPQHAPQVGA PGMIMGKPVM DPAMYAQQSH  240
PYMAQQMWQQ APDQQQSPSD H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-4190180597NF-YC
4awl_C6e-4190180294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4190180294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C8e-41651803119HapE
4g92_C8e-41651803119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875193.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875195.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-93NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5W0Q01e-162M5W0Q0_PRUPE; Uncharacterized protein
STRINGGLYMA19G42460.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.47e-84nuclear factor Y, subunit C9