PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873601.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 340aa    MW: 36377.3 Da    PI: 6.7863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_015873601.1 142 YECKTCNRTFPSFQALGGHRASH 164
                     99**********99999998887 PP

2zf-C2H212.30.00051238260123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F++   L  H+r+H
  XP_015873601.1 238 HECSVCGSEFTSGQALGGHMRRH 260
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-13141166IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-8141164No hitNo description
SMARTSM003550.052142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554142169IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-8233260No hitNo description
Gene3DG3DSA:3.30.160.609.5E-4236260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118238265IPR007087Zinc finger, C2H2
PfamPF139121.6E-11238262IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELAPEEFVG SNSNNNNDES QSHLIVKGKR TKRRHRSPSS PSPPTLLAAT SSSSSATAGG  60
DEYLSLSSPT TSSGGGGCGG GGEIYESTEE EEDMANCLIL LAQGDHAFKQ IEKLSPTITT  120
TTTTTAANTS VSGVGKAGFF VYECKTCNRT FPSFQALGGH RASHKKPRAA MVEDKKASPP  180
ISTNIMDIEY EDVLVFNKVN STSNITTAPP TSHNNSMPLQ QIANVKAFIQ SNKAAKIHEC  240
SVCGSEFTSG QALGGHMRRH RAASSAQSLE IVTNTSTSTS TTRTSNNSSM DEMKQRNILA  300
LDLNLPAPED DHHRESNKFQ FVPTQQALVF SSPALVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873601.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLB9HQP75e-79B9HQP7_POPTR; Zinc finger family protein
STRINGPOPTR_0009s01020.11e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-46C2H2 family protein