PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015873353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 537aa    MW: 60618.9 Da    PI: 6.8209
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015873353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000737393323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk Fs+   L  H r H
  XP_015873353.1 73 CEYCGKGFSSGKALGGHKRYH 93
                    **************9999988 PP

2zf-C2H213.50.00021150171223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C k F++k +L  H+r+H
  XP_015873353.1 150 TCCLCQKEFPSKKSLFGHMRSH 171
                     7********************9 PP

3zf-C2H213.60.00019411433123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ CgksF++   L  H ++H
  XP_015873353.1 411 FKCSSCGKSFPTFQALGGHRSSH 433
                     89***********9999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.69E-56795No hitNo description
SMARTSM003551.47193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6167198IPR007087Zinc finger, C2H2
PfamPF139129.8E-87193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-47396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM003550.085149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037149176IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7150171No hitNo description
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
PfamPF139126.5E-5151173IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7406433No hitNo description
SMARTSM003550.082411433IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967411438IPR007087Zinc finger, C2H2
PfamPF139122.7E-10411434IPR007087Zinc finger, C2H2
PROSITE patternPS000280413433IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDEDRENQIE DHKQQQLKLK IIKSSDWNIG DDERKPAVIK TEIDDDNEEN QIDQVHHHHH  60
EISTTPPPLP RICEYCGKGF SSGKALGGHK RYHIQEARKY GLIIPRKTMK LKLKKHKVLY  120
DDVHHGTSSP SPSSAKINSN SQQEEKEKST CCLCQKEFPS KKSLFGHMRS HRDRDWRGIQ  180
PPPMMMSSDR SRSSSCSPPM AAAVATEMKQ QQLDHDDVED EAEDYYNQIE NTSLEFTESR  240
TFEPVEVLRT WCKTDKRGRK SIGDQVAAER LVSLSLGEQE QGEEQQQSLM MMKKIGSKIS  300
GYDSDDSYWL REDQELELDH HVDKQQHQHQ QQWSVNVNVK KNVDYGSYQG RQHQPNDYDA  360
VSNKRKMTTA KKDKFSYSEK RPRKSGGGVL EVNSLDGGGG GGVRKKPKTS FKCSSCGKSF  420
PTFQALGGHR SSHNKDKHTN HPHTLAEDSA EVGIDGRAGA GNNKVQVKVD NVTSKSMYNE  480
KIGNGGKSSS SQVDDQDQAA LMTSEASQSS HTGPRKVLDF DLNETYVMED DEEEGAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015873353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873353.10.0uncharacterized protein LOC107410437
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-16C2H2 family protein