PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 378aa    MW: 43372.4 Da    PI: 9.4924
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-1628119199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+  ps     + l +p kf++++g +   s   t++ ++gr+W++ l  +k  +++++ +GW+eFv+ + +++g f++F ++g s+f  +v 
  XP_015872063.1  28 FFKIIYPSILAD-QKLEIPSKFVKKFGDE--LSEVATVTVSNGRTWQLGL--KKAERAILFVDGWQEFVEYHSIDSGYFLLFGYQGFSKF--NVC 115
                     677775555555.55**********9865..77789999999********..********************************987888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_015872063.1 116 IFDK 119
                     9998 PP

2B345.71.2e-142813561490
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     + + +p +f+ +++ +  +s  + +++ +g++W++k+++r++++    +++GW+ F ++ +LkegD++vF+l++++++
  XP_015872063.1 281 SFVDVPGEFVMKYMRS--CSEFINIQSINGKQWQMKCRFRNGRSLvKRISGGWSAFKNEFNLKEGDICVFELIKQKGT 356
                     347899****999866..8889***************9977765558899**********************996655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2122120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2024127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1427118No hitNo description
PROSITE profilePS5086313.09827120IPR003340B3 DNA binding domain
SMARTSM010191.4E-1328120IPR003340B3 DNA binding domain
PfamPF023621.6E-1228119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-19263354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-17263354IPR015300DNA-binding pseudobarrel domain
CDDcd100179.77E-17267357No hitNo description
PROSITE profilePS5086311.392268366IPR003340B3 DNA binding domain
SMARTSM010194.8E-13269361IPR003340B3 DNA binding domain
PfamPF023622.6E-12272356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAKPWDRRE NVAGSGYTKQ RSGPPSHFFK IIYPSILADQ KLEIPSKFVK KFGDELSEVA  60
TVTVSNGRTW QLGLKKAERA ILFVDGWQEF VEYHSIDSGY FLLFGYQGFS KFNVCIFDKT  120
ATEIDYPCHG RSSNKQYSEN VEQVVADDDH DEISEQYTDQ QDGGRKRKKL DKRVTSLKCK  180
AAKRSKNCEL EGQAEQVGLG DANRTTRGKM KIENGTHCSH DLSANDEDEE ELMIISKSFY  240
RCRRKPVMSK ETERAFHAAR TCKHTHPCFL VLLRKRNVAC SFVDVPGEFV MKYMRSCSEF  300
INIQSINGKQ WQMKCRFRNG RSLVKRISGG WSAFKNEFNL KEGDICVFEL IKQKGTLLRA  360
SIYHAADYAD PVKKRLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1924336923146B3 domain-containing transcription factor VRN1
4i1k_B2e-1924336923146B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872063.10.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-52B3 family protein