PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015871199.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 385aa    MW: 41817.9 Da    PI: 6.5829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015871199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21182231255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_015871199.1 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDEAAYKLRG 231
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.35E-34181241No hitNo description
Gene3DG3DSA:3.30.730.102.2E-32182240IPR001471AP2/ERF domain
PROSITE profilePS5103223.103182239IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23182240IPR016177DNA-binding domain
SMARTSM003802.3E-38182245IPR001471AP2/ERF domain
PRINTSPR003673.9E-11183194IPR001471AP2/ERF domain
PfamPF008471.2E-14183231IPR001471AP2/ERF domain
PRINTSPR003673.9E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAATMEFYSS SGALQSSDPF TGELMEALEP FMKGVSSSSP SPSSSPSSNT HYPTSSPSPS  60
SSYGFLSFSP SFQTQPSFFQ DGCSTSMTHV VSDGFSTTQN NHFGLEQQPG CSIGLNNLTP  120
SQILEXPSSD PTPKPSKPSL AKSHHHLQRP QYQQQLNHTL SFLSPKPIPM KHVGSPPKPT  180
KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDEAAYKLR GDFARLNFPH  240
LRQNGSRVTG EYKPLHSSVD AKLQAICQSL AENNEKQGKA GKSSSGGATK RSSSSASNRS  300
QTNLNSTVTK VEQPEPESEP NGSENCCKVE VCSSSVVMSE SDGSAGSSPL SDLTFPEPTD  360
GPWDTSVPDN LILEKYPSEI DWESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21181239160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015871199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871199.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2P5CKK31e-128A0A2P5CKK3_PARAD; AP2/ERF transcription factor
STRINGXP_009373164.11e-125(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.19e-52related to AP2 4