PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 549aa    MW: 59804.4 Da    PI: 4.7169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11365407754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  XP_015869842.1 365 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 407
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16361426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-16365420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-12365411No hitNo description
CDDcd048734.76E-6478538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLSRMNSMVW MEDREDENST PWTRNTAGAG TGEGTGAANN NNDDGVQNKD EMGSLSSFKS  60
MLEAEDDWYV TGNGLQNHSA AMRDISFSQS LADPENLLLH QVDSSSSCSP SSSLFNNLDP  120
SQVQYFLPPK PTLSSLLNVV SNNPLEHGFD WGEIGFLDNQ VPNASSMLNR GGMVLNGFTD  180
LSSNNQMSTH NLCSDPQIST TGVPRLAEND AGLSGFRGFD DTENAQFLNR SKLLRPLEYF  240
PSMGAQPNLF QKRAALRKNL ADNGENLGGV SGSESGLLSN GIEGDSGKRE MGEENEKKRK  300
MSGADDLEDG SIDGSGLNCE SDEFTENNTK LEDNGNGGSS SNANSAVTVG DQKGKKKGLP  360
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR INDLHNELES  420
TPPGSSLTPS TSFHPLTPTP PTLPSRIKEE LCPSSLSSPN GQSARVEVRV REERTINIHM  480
FCGRRPGLLL STMMALDNLG LDIQQAVISC FNGFAMDIFH AEQCKESQDI NPDHIKAVLL  540
DSAGFHGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354372KKKGLPAKNLMAERRRRKK
2366373ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869842.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_015888410.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-136ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW820.0A0A0S2CW82_PRUMU; Inducer of CBF expression a
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-111bHLH family protein