PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 195aa    MW: 22331.1 Da    PI: 9.6573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32116174159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d  ++++tYeg H h+
  XP_015869717.1 116 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTRDDGIIVTTYEGMHSHP 174
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-33101174IPR003657WRKY domain
SuperFamilySSF1182901.83E-29108175IPR003657WRKY domain
PROSITE profilePS5081129.677111176IPR003657WRKY domain
SMARTSM007745.0E-38116175IPR003657WRKY domain
PfamPF031062.7E-26117174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MENYQMFFPC SSSMGQPSGF PMASNMGAAS SNMGFNGLQG ESLNGFLNLR TENQVRLVRE  60
EEEVEKHHSQ SGSITTSADH GAENGQARML AGRKKGEKKI RKPRYAFQTR SQVDILDDGY  120
RWRKYGQKAV KNNKFPRSYY RCTYQGCNVK KQVQRLTRDD GIIVTTYEGM HSHPIDKPTD  180
NFEHILNQMQ IYTPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27106175776Probable WRKY transcription factor 4
2lex_A2e-27106175776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871944.11e-148PREDICTED: probable WRKY transcription factor 75
RefseqXP_015869717.11e-148PREDICTED: probable WRKY transcription factor 75
TrEMBLM5WY442e-79M5WY44_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s33560.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-58WRKY DNA-binding protein 75