PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015868431.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 343aa    MW: 36810.1 Da    PI: 7.3008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015868431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_015868431.1 145 YECKTCNRTFPSFQALGGHRASH 167
                     99**********99999998887 PP

2zf-C2H212.30.00051241263123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F++   L  H+r+H
  XP_015868431.1 241 HECSVCGSEFTSGQALGGHMRRH 263
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13144169IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-8144167No hitNo description
SMARTSM003550.052145167IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554145172IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-8236263No hitNo description
Gene3DG3DSA:3.30.160.609.6E-4239263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023241263IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-11241265IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118241268IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLLTCTWLSL CFVCLPLNNN DESQSHLIVK GKRTKRRHRS PSSPSPPTLL AATSSSSSAT  60
AGGDEYLSLS SPTTSSGGGG CGGGGEIYES TEEEEDMANC LILLAQGDHA FKQIEKLSPT  120
ITTTTTTTAA NTSVSGVGKA GFFVYECKTC NRTFPSFQAL GGHRASHKKP RAAMVEDKKA  180
SPPISTNIMD IEYEDVLVFN KVNSTSNITT APPTSHNNSM PLQQIANVKA FIQSNKAAKI  240
HECSVCGSEF TSGQALGGHM RRHRAASSAQ SLEIVTNTST STSTTRTSNN SSMDEMKQRN  300
ILALDLNLPA PEDDHHRESN KFQFVPTQQA LVFSSPALVD CHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015868431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868431.10.0zinc finger protein ZAT5-like
TrEMBLA0A2P6QGP91e-82A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294532.12e-77(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-46C2H2 family protein