PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015865703.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 554aa    MW: 61270.5 Da    PI: 6.41
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015865703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.81.3e-771675462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+++g+ +++q+l+  l+elas++gd+++Rlaa+ ++AL ++l++ s s+++++    + ++ +     ++l  f+evsP++ f +
  XP_015865703.1 167 EQLLNPCATAITAGNPNRVQHLIYVLHELASSTGDANHRLAAHGLRALTHHLSSsSASSCSASEGYVSFTSAEPRFFQKSLLKFYEVSPWFAFPN 261
                     689***************************************************44555555555566665555555555555************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfe 177
                      +aN+ Il+ +++e    + +Hi+D ++s+G+QWp+Ll+aL+ R+ ++pp +RiT+++   ++              ++  rL  fA++++++++
  XP_015865703.1 262 NIANSSILQILSEEsdqkRNLHILDVGVSHGVQWPTLLEALTRRSgGPPPLVRITVISGTVNDqktetpfsIGPPGDNLSPRLLGFAKSMNINLQ 356
                     *********999888777889************************55666*******987777555555555556688999************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfd 269
                     +n l  + l+ l+ + ++ +p+E+l+V+ +++lh+l    +s+++er+e+Lk+++++ Pk v+++e++a++  ns ++F+++f++ ++y ++++d
  XP_015865703.1 357 INRLDNQPLQVLNSQVINSSPDETLIVCAQFRLHHLN---HSSPDERTEFLKALRNMGPKGVILSENNAECscNScGDFATGFSRRVDYLWKFLD 448
                     ***9999*****************************8...67777788******************997664354259***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er+l++ e+ +v++++ ++    +e +ekW er++ aGF    l+e+a +  ++llrk++ ++++r ee++g + l Wk
  XP_015865703.1 449 STSSAF----KGRESDERRLMEGEAAKVLTNRCEM----NEVKEKWCERMRGAGFVGEILGEDAIDGGRALLRKYDnNWEMRTEEKDGYVGLWWK 535
                     **7775....6666677777777899999877666....999**********************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++p+ ++S W+
  XP_015865703.1 536 GQPVSFCSLWK 546
                     **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.475140525IPR005202Transcription factor GRAS
PfamPF035144.6E-75167546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MTIEEPEPNS ASDHILDWLE DSVSFLPFLD DPYNSGEING YHWWDESQDI THDLINARVA  60
SINSPPAIAT DISTAPANPP ISDHVPSPNS SKKRKASDYP IPKTSRNHQN QKMNQGRRIN  120
QPEDGDVVAA QEVVPPPKKS GGNKKGSGKA TGNTCNNGNV KEGRWAEQLL NPCATAITAG  180
NPNRVQHLIY VLHELASSTG DANHRLAAHG LRALTHHLSS SSASSCSASE GYVSFTSAEP  240
RFFQKSLLKF YEVSPWFAFP NNIANSSILQ ILSEESDQKR NLHILDVGVS HGVQWPTLLE  300
ALTRRSGGPP PLVRITVISG TVNDQKTETP FSIGPPGDNL SPRLLGFAKS MNINLQINRL  360
DNQPLQVLNS QVINSSPDET LIVCAQFRLH HLNHSSPDER TEFLKALRNM GPKGVILSEN  420
NAECSCNSCG DFATGFSRRV DYLWKFLDST SSAFKGRESD ERRLMEGEAA KVLTNRCEMN  480
EVKEKWCERM RGAGFVGEIL GEDAIDGGRA LLRKYDNNWE MRTEEKDGYV GLWWKGQPVS  540
FCSLWKLGIK VDDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-221685466375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865703.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLW9QBW90.0W9QBW9_9R
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein