PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00180.1.g00110.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 252aa    MW: 27074.3 Da    PI: 4.7879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00180.1.g00110.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-1691140355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  Zjn_sc00180.1.g00110.1.sm.mk  91 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 140
                                   57******.**********32..2.24***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-3090154IPR001471AP2/ERF domain
PROSITE profilePS5103221.64190148IPR001471AP2/ERF domain
PRINTSPR003671.8E-891102IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2191150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-2891149IPR001471AP2/ERF domain
CDDcd000183.89E-1491125No hitNo description
PfamPF008472.3E-1291140IPR001471AP2/ERF domain
PRINTSPR003671.8E-8114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQEKHSAPA AAEAASDAPL PFDTTDIDDD TVLQLEAILL GTDTDSTVPC SDMSTSSELE  60
DGRVSSAATN DHLQRPHPGY SQVPKQPPAA FIGVRKRPWG KFAAEIRDST RKGARVWLGT  120
FDTPEAAALA YDQAAFSARG AAAVLNFPLE CVRESLAAMA LTAGSSPILA LKRRHSKRTR  180
RRKVPPVSDR SKDPTPPACR RSDESAVLGS TVEVPQQQAT APCPFDCSVN VVELEELGAD  240
YLDELLWMSS GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2491151666ATERF1
3gcc_A4e-2491151666ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-93KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979115.11e-55PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLK3ZLM51e-49K3ZLM5_SETIT; Uncharacterized protein
STRINGSi027485m4e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2868035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.18e-36ethylene-responsive element binding factor 15