PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00148.1.g00620.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 442aa    MW: 46305.3 Da    PI: 9.55
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00148.1.g00620.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1227e-38582062129
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                    g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++                 
  Zjn_sc00148.1.g00620.1.sm.mk  58 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdaaagfpshpasaagat 138
                                   689*************************************************************78876655544444333 PP

                           TCP  66 ...ssssaseceaesssssasnsssg.............kaaksaakskksqksaasalnlak.esr.......akarara 122
                                      +   a                 +              +++ + +s+ s++s+ s+l+l++ e r       a+ar+ra
  Zjn_sc00148.1.g00620.1.sm.mk 139 skdP---A-----------------PadadaavadvddqGNQQRSGCSSTSETSKGSVLSLSRsEGRvkarercAQARERA 199
                                   2110...1.................12222233444443333333355555666666666666566622222225555556 PP

                           TCP 123 rertrek 129
                                   rer++  
  Zjn_sc00148.1.g00620.1.sm.mk 200 RERSAAA 206
                                   6655544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3959205IPR005333Transcription factor, TCP
PROSITE profilePS5136931.85660118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEACGGGVGE ARKRGRVKDG ETGGELPDAK RRAAALAQQP WAAQQHPASR IYRVSRASGG  60
KDRHSKVYTA KGIRDRRVRL SVATAIQFYD LQDRLGYDQP SKAIEWLIKA AADAIDKLPS  120
LDAAAGFPSH PASAAGATSK DPAPADADAA VADVDDQGNQ QRSGCSSTSE TSKGSVLSLS  180
RSEGRVKARE RCAQARERAR ERSAAAGRDK DKDPGDDGGA TGRRATATAS SFTELLTGMA  240
AAAAAPAVAE HKQQASASWT PMTVSATADY IGFAQPRKAA GHAMAHTFAS PAPHLGNISM  300
APAAQHFGLS AGAVTVASGG GEPHAEMTQF SFLQDHFMPV HAVPASGPAG DYNLNFSMSS  360
GLVGVNSRGT LQSNSQPHIS GHHHHHQQQL QRLSTPLDAP NIPFLFSPAA AVTTPTTADT  420
QFAAFQLWNG FHHADMKEKG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2765119155Putative transcription factor PCF6
5zkt_B7e-2765119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1904561e-140EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396804.10.0transcription factor PCF6
TrEMBLA0A1E5W0K90.0A0A1E5W0K9_9POAL; Transcription factor PCF6
STRINGPavir.Ba03864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2