PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00143.1.g00680.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 304aa    MW: 30733.2 Da    PI: 10.6641
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00143.1.g00680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.75.9e-4056149294
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                   ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss
  Zjn_sc00143.1.g00680.1.am.mk  56 PPKRSSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 136
                                   789******************************************************************999888888888 PP

                           TCP  82 asnsssgkaaksa 94 
                                   +s+ s++++ ++a
  Zjn_sc00143.1.g00680.1.am.mk 137 GSSFSIPAHLRAA 149
                                   8877777555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-3961181IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67562116IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDITGDTGGG RRPNFPLQLL EKKEEQPSST SPAAAGRPNG SAAAQGGELQ VRKVAPPKRS  60
STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE PAVIAATGTG  120
TIPANFTSLN ISLRSSGSSF SIPAHLRAAG LPGSRFGGAR GDAWDRVVGL GFGGGGAEGP  180
ASATSSASSP LLLSFHSGSV AAAGGGTESI WTFPQSGSGG AATVYRGVPS GLHFMNFPAP  240
MALIPGGQQL GLAAPVGSGT DNGGGGEGHM GVLAALNASR AQAVTVAAQN GAEGSNQQQQ  300
QQHQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545321e-127BT054532.1 Zea mays full-length cDNA clone ZM_BFc0140K14 mRNA, complete cds.
GenBankKJ7268361e-127KJ726836.1 Zea mays clone pUT3376 TCP transcription factor (TCP10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655935.11e-105PREDICTED: transcription factor TCP14-like
TrEMBLA0A0A8Y7R21e-121A0A0A8Y7R2_ARUDO; Uncharacterized protein
STRINGGRMZM2G142751_P011e-106(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-47TCP family protein