PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00141.1.g00400.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 711aa    MW: 76555.2 Da    PI: 6.1273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00141.1.g00400.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.6e-1162816502374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 
                                   v +L++cA+ +++ d ++a+ +Larl  +asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++    ++ + a
  Zjn_sc00141.1.g00400.1.sm.mk 281 VGALTACADSLAAYDYQAANYYLARLGMIASPAGpTPMHRVAAYFAEALAIRVVRTWPHLFDVTPPRELTDGAvGDDDAVA 361
                                   678*****************************************************************998887899999* PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                                   l++++ ++Pi++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+++p ++RiTgvg+    sk+el+ t
  Zjn_sc00141.1.g00400.1.sm.mk 362 LRVLNAITPIPRFLHFTINERLLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLAARANPPSHVRITGVGE----SKQELQDT 438
                                   *********************************************************************....******** PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   g rL ++A++lg+ fef++ v++rled++l++L+vk gE++aVn+vl++hrll ++  +  +  ++L l +s+ + ++ + 
  Zjn_sc00141.1.g00400.1.sm.mk 439 GARLGHVAASLGLAFEFHA-VVDRLEDVRLWMLHVKGGECVAVNCVLAVHRLLCNENGT--ALADFLGLARSTGAAILLLG 516
                                   *******************.7*******************************9554444..4589**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   e+e+ +ns+++ +rf+ al+yy+a fd++ +a+l+ +s +r+kvE++ ++rei+++va ega+r erhet++ Wr+ +ee+
  Zjn_sc00141.1.g00400.1.sm.mk 517 EREVALNSGRWEARFACALRYYAAAFDAVdAAGLAYTSLARAKVEEM-FAREIRSAVAFEGADRLERHETFAGWRRLMEEC 596
                                   *****************************9999**************.********************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   GFk++ l++++a+q +++ r+++   y+v+ +   ++l+l W ++++++vSaW+
  Zjn_sc00141.1.g00400.1.sm.mk 597 GFKNAGLGDREAMQGRMITRMFAPSNYSVQAQgdGEALTLQWLNQAMYTVSAWT 650
                                   ***********************666***9654256677**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.89254628IPR005202Transcription factor GRAS
PfamPF035145.7E-114281650IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MEVSTCRSLG LAVDAVRALR SGMVAALQQE ENEEEGTEEE ERSGSLPGTS HPAVSRISRM  60
LAGCSFTSSR HHMSTTQRFD ILQCGLSKRS NRGGDGAAAQ RVAAADASTG GATCSFRAHP  120
APPVAQAVSW GAKPEPSGNV AGGGVWERSR AVKRAHEEDV VEEYGGPIVR AKRTRMGGEG  180
DEVWFRQPIA GTVQQAAPGE GEEGDEEKVF LVPSAAAFPH GMAAAGPSLA AAKQEEFSNS  240
PSPASSVGTD GGSSAVPPPD VHAKNGVPLT GEVAREAMEL VGALTACADS LAAYDYQAAN  300
YYLARLGMIA SPAGPTPMHR VAAYFAEALA IRVVRTWPHL FDVTPPRELT DGAVGDDDAV  360
ALRVLNAITP IPRFLHFTIN ERLLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLAARANPP  420
SHVRITGVGE SKQELQDTGA RLGHVAASLG LAFEFHAVVD RLEDVRLWML HVKGGECVAV  480
NCVLAVHRLL CNENGTALAD FLGLARSTGA AILLLGEREV ALNSGRWEAR FACALRYYAA  540
AFDAVDAAGL AYTSLARAKV EEMFAREIRS AVAFEGADRL ERHETFAGWR RLMEECGFKN  600
AGLGDREAMQ GRMITRMFAP SNYSVQAQGD GEALTLQWLN QAMYTVSAWT PRPTATQEEA  660
RLSEEERTGF FSEYHGKGSL ICMSLASCFY RSTSRKELSV TRLRWTYAVE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5928765226381Protein SCARECROW
5b3h_A8e-5928765225380Protein SCARECROW
5b3h_D8e-5928765225380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A1E5WNH30.0A0A1E5WNH3_9POAL; Scarecrow-like protein 28
STRINGSi008220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-126GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]