PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00141.1.g00400.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 711aa    MW: 76555.2 Da    PI: 6.1273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00141.1.g00400.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.6e-1162816502374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 
                                   v +L++cA+ +++ d ++a+ +Larl  +asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++    ++ + a
  Zjn_sc00141.1.g00400.1.sm.mk 281 VGALTACADSLAAYDYQAANYYLARLGMIASPAGpTPMHRVAAYFAEALAIRVVRTWPHLFDVTPPRELTDGAvGDDDAVA 361
                                   678*****************************************************************998887899999* PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                                   l++++ ++Pi++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+++p ++RiTgvg+    sk+el+ t
  Zjn_sc00141.1.g00400.1.sm.mk 362 LRVLNAITPIPRFLHFTINERLLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLAARANPPSHVRITGVGE----SKQELQDT 438
                                   *********************************************************************....******** PP

                          GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   g rL ++A++lg+ fef++ v++rled++l++L+vk gE++aVn+vl++hrll ++  +  +  ++L l +s+ + ++ + 
  Zjn_sc00141.1.g00400.1.sm.mk 439 GARLGHVAASLGLAFEFHA-VVDRLEDVRLWMLHVKGGECVAVNCVLAVHRLLCNENGT--ALADFLGLARSTGAAILLLG 516
                                   *******************.7*******************************9554444..4589**************** PP

                          GRAS 243 eqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   e+e+ +ns+++ +rf+ al+yy+a fd++ +a+l+ +s +r+kvE++ ++rei+++va ega+r erhet++ Wr+ +ee+
  Zjn_sc00141.1.g00400.1.sm.mk 517 EREVALNSGRWEARFACALRYYAAAFDAVdAAGLAYTSLARAKVEEM-FAREIRSAVAFEGADRLERHETFAGWRRLMEEC 596
                                   *****************************9999**************.********************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   GFk++ l++++a+q +++ r+++   y+v+ +   ++l+l W ++++++vSaW+
  Zjn_sc00141.1.g00400.1.sm.mk 597 GFKNAGLGDREAMQGRMITRMFAPSNYSVQAQgdGEALTLQWLNQAMYTVSAWT 650
                                   ***********************666***9654256677**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.89254628IPR005202Transcription factor GRAS
PfamPF035145.7E-114281650IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MEVSTCRSLG LAVDAVRALR SGMVAALQQE ENEEEGTEEE ERSGSLPGTS HPAVSRISRM  60
LAGCSFTSSR HHMSTTQRFD ILQCGLSKRS NRGGDGAAAQ RVAAADASTG GATCSFRAHP  120
APPVAQAVSW GAKPEPSGNV AGGGVWERSR AVKRAHEEDV VEEYGGPIVR AKRTRMGGEG  180
DEVWFRQPIA GTVQQAAPGE GEEGDEEKVF LVPSAAAFPH GMAAAGPSLA AAKQEEFSNS  240
PSPASSVGTD GGSSAVPPPD VHAKNGVPLT GEVAREAMEL VGALTACADS LAAYDYQAAN  300
YYLARLGMIA SPAGPTPMHR VAAYFAEALA IRVVRTWPHL FDVTPPRELT DGAVGDDDAV  360
ALRVLNAITP IPRFLHFTIN ERLLRAFDGH DRVHVIDFDI KQGLQWPGLL QSLAARANPP  420
SHVRITGVGE SKQELQDTGA RLGHVAASLG LAFEFHAVVD RLEDVRLWML HVKGGECVAV  480
NCVLAVHRLL CNENGTALAD FLGLARSTGA AILLLGEREV ALNSGRWEAR FACALRYYAA  540
AFDAVDAAGL AYTSLARAKV EEMFAREIRS AVAFEGADRL ERHETFAGWR RLMEECGFKN  600
AGLGDREAMQ GRMITRMFAP SNYSVQAQGD GEALTLQWLN QAMYTVSAWT PRPTATQEEA  660
RLSEEERTGF FSEYHGKGSL ICMSLASCFY RSTSRKELSV TRLRWTYAVE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-432806494374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.10.0PREDICTED: scarecrow-like protein 28
TrEMBLK3Y2010.0K3Y201_SETIT; Uncharacterized protein
STRINGSi008220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-126GRAS family protein