PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00127.1.g00590.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 381aa    MW: 40407.2 Da    PI: 5.4788
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00127.1.g00590.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.63.2e-3273172297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g ++
  Zjn_sc00127.1.g00590.1.am.mk  73 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPSF 153
                                   69*************************9977778***************************************88899*** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   sf+++h+q ife+++ iW+
  Zjn_sc00127.1.g00590.1.am.mk 154 SFRSPHEQAIFEIARTIWR 172
                                   ******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-2974171IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MFPMVDDPSA AAGGGAMVSS SFPDADAYGN GDSEDIDFPA GPNSHASFSA APATTAATSA  60
GAGGPGSGER RALFQRLWTD EDEIVILRAF AEFTAQRGTA FASHQYDTTP FYEDMRGRLQ  120
TGFTKSQLVE KLRRLKRKYR NCVDRLRVAG PSFSFRSPHE QAIFEIARTI WRPGSDKHGR  180
DSDDEGNEDA LAVDAAAAAA AVAAGARVNG DSARSPSSRS RRGRRRRKGD FPATDTAEAL  240
PPAPMPAMTT EDALPSFPQP MAMDGGTITM DPAAAGLPAV LSAAATVATP GAAENPILAS  300
LFKEMIRSML NISSSSAPLG LEPPPPAIPG MPMDGEKWRQ QRILELEVYL RRIALLQDQA  360
QAALEELRSA PPHHGAGGMN T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876801e-127BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542301e-127EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285201e-127JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-157probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-156A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-156A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-31DNA-binding storekeeper protein-related transcriptional regulator